I am aware of TrackMate-extras and benoit lombardo's multi-channel intensity analysis, which has been really useful for me. I am having a slight problem though; I would like to increase the size of the already detected spots to be used by the intensity analyzer. It appears that increasing the displayed spot radius ratio doesn't actually change the spot size for the intensity analysis, it just changes the display. As far as I can see I get the same results no matter what the display radius is.
This is probably best directed @tinevez