So I went through the previous posts and I assume you refer to the getShortestPathPoints() function to be used on my Longest shortest path in order to get the array of lines along it…unfortunately I’m a newbie in java so I couldn’t understand how to implement this on my Longest shortest path.
The macro I recorded for the analysis of the binarized image is:
run("Analyze Particles...", "size=1000-Infinity display add");
run("Analyze Skeleton (2D/3D)", "prune=none calculate");
selectWindow("Longest shortest paths");
// ArrayList<point> getShortestPathPoints() - not a clew how to proceed...
I would appreciate it if you could point me out on how to define the parameters for my output in order to get the array.