Indeed, I downloaded the latest version of ImageJ bundled with 64-bit Java 1.6.1_24 and I was able to run BoneJ.
I don't use Fiji, it is not even installed on my computer.
However, when running a simple macro with the BoneJ release you sent
I get a log file and I can't even click on "OK", the only possibility is to close the window and I don't get any result.
Caution: Connectivity is negative.
This usually happens if there are multiple
particles or enclosed cavities.
Try running Purify prior to Connectivity.
Isn't possible to just remove those 3 lines of code? Just to not warn people that connectivity shouldn't be negative?
I work in soil science, I study soil samples though X-ray microtomographic scans. It is not unusual to get positive Euler number (or negative connectivity)...