I tried all options including autoloader. The regular-grid options do not work, as my datasets are not in square shapes. In other words some places in the regular grid are empty. The wildcard parsing options give me only one variable (tile) and not two for x and y position. I did not find an option to specify the tile locations from metadata. I only found the manual shifting of tiles. Am I overlooking something?
On http://imagej.net/BigStitcher_AutoLoader the subsection under the title Patterns in filenames is missing unfortunately.
Thank you in advance and all the best,