This is not actually a ImageJ problem.
I’m using MATLAB 2016b and need to call the TrackMate from there via script.
Since to run TrackMate from Matlab I have to do both of them running above the same JVM and the TrackMate only runs in Java 8, a installed the JRE for Java 8 and set the variable MATLAB_JAVA to points to JRE directory.
The problem is when I set the previous mentioned variable and open the MATLAB, I receive in the prompt command a message informing that the all the configuration made are no being saved and the config file is corrupted. Checking on MATLABs forum  I confirm that this situation is related to the Java 8.
- MATLAB 2016b ships Java 7;
So, I’m stuck on this.
Anybody knows any workaround?