I have stacks of binarized files containing particles. I can plot those particles in 3D using the 3D viewer (or Volume viewer, or object counter…), and measure their volume and several other characteristics using all the tools in Fiji.
However, I didn’t find any way to generate a 3D plot that colors the particles depending on their volume?
I managed to get a colored 3D plot using the Analyse>3D Object counter, but it just colors particles on a pre determined color scale, only depending on their number.
Here is an example of the reconstructed 3D stack using the 3D viewer, but all the particles are green. How can I color them depending on their volume?