Color Threshold Histology

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Tags: #<Tag:0x00007fb881480418>

#1

Hi! I am new in ImageJ, so please be kind! I am trying to quantify black stained fibers on histology images like the one attached. Is that possible using the threshhold tool?


#2

@Nadine2016

Welcome to ImageJ and the Forum!

So… perhaps you can clarify a bit more…

  1. What are the ‘black stained fibers’ you are trying to Segment?
  2. When you say “quantify” - what exactly do you want to measure? Area? Curvature? etc.

You can try the Color Threshold tool - that potentially could work… You can also try the Fiji plugin Trainable Weka Segmentation. :slight_smile:

Too - if you are really just getting started with ImageJ/Fiji - here are some helpful links:

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