CT MR registration

Tags: #<Tag:0x00007fd5487935b8>


Hi I need to align rigidlly CT and MR from one subject.What is the best plugin for that?
Usually I use a 6 degrees of freedom rigid alignment with other softwares.


If you are talking about 3D registration, the only option available is landmark-based alignment using either the 3D viewer, VIB or BigWarp.


thank you I will give them a try


Hi, I’m a new participant.
I’m using Elastix Software (S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, “elastix: a toolbox for intensity based medical image registration”, IEEE Trans. Med. Imaging, vol. 29, no. 1, pp.196 – 205, Jan. 2010) in a very simple way. In my imageJ plugin, a just created a batch file which can call elastix and transformix as a command line (see elastix manual), then using exec(…) function I run the batch file.
Just try it, and if you are satisfied, I have a tip to call elastix invisibly.