This seems to be a good thread to ask this question, but pardon me if there is a better forum; I’m relatively new to ImageJ and the community.
I have many hdf5 files, each storing only one 3D DataArray, but in each case of large size. I would like to read them all into Fiji at once as a 4D hyperstack (txyz). I thought creating a container hdf5 file and using external links (using h5py, see here) to each of the individual files would be the best way to do it, then open the container file using HDF5_Vibez plugin, and select all the external links to load as a hyperstack. However, as far as I can tell, HDF5_Vibez does not seem to recognize external links. Does anyone know for sure if that is the case? If it generally does recognize external links (and can load them), then something must be wrong with the way I’m encoding the external links, but I’d like to rule out that it’s simply not a feature first.