I’ve been using the Stitching Plugin to stitch tiled images from Zen. For the most part, it works perfectly, but occasionally, I get a few stitched images with off-color tiles ( see picture ). I’ve tried restitching it but the same error occurs. I’ve also checked to make sure there is nothing wrong with the original file.
Welcome to the forum and sorry no one has gotten back to you so far.
Some follow up questions that might help us figure out what’s happening:
- Are your original tiles multi- or single-channel?
- Are they 2d or 3d?
Also, there’s a cool new stitching plugin for fiji called the BigStitcher with a lot of nice features. It’s worth checking out!