Looking for a headless HDF reader

hdf5
format
batch-processing
fiji
Tags: #<Tag:0x00007fb87c1ea938> #<Tag:0x00007fb87c1ea7d0> #<Tag:0x00007fb87c1ea640> #<Tag:0x00007fb87c1ea4d8>

#21

Actually, this plugin still does not work when fiji is run with “–headless” flag. This is caused by both HDF5ImageJ .loadDataSetsToHyperStack and HDF5ImageJ.loadCustomLayoutDataSetToHyperStack calling imp.show()


#22

And now there is a PR https://github.com/fiji/HDF5_Vibez/pull/2 that fixes it.


#23

The PR was merged, but I have not cut a new release yet. Will do so in the next batch of Fiji updates (typically every 4-12 weeks) unless you urgently desire it sooner.


#24

A post was split to a new topic: Does HDF5_Vibez support external links in HDF5 files?