Looking for a headless HDF reader

fiji
format
batch-processing
hdf5
Tags: #<Tag:0x00007fa307536478> #<Tag:0x00007fa307536338> #<Tag:0x00007fa307536130> #<Tag:0x00007fa307535ff0>

#21

Actually, this plugin still does not work when fiji is run with “–headless” flag. This is caused by both HDF5ImageJ .loadDataSetsToHyperStack and HDF5ImageJ.loadCustomLayoutDataSetToHyperStack calling imp.show()


#22

And now there is a PR https://github.com/fiji/HDF5_Vibez/pull/2 that fixes it.


#23

The PR was merged, but I have not cut a new release yet. Will do so in the next batch of Fiji updates (typically every 4-12 weeks) unless you urgently desire it sooner.


#24

A post was split to a new topic: Does HDF5_Vibez support external links in HDF5 files?


#25

@ctrueden

Hi all,
I am in the final month of my current employment and will be unable to continue support for this plugin from this point onward.

Is there someone else who would be willing to take over the responsibilities of managing this repository?

Thanks, and it has been a pleasure!
-kmd


#26

@radoslaw.ejsmont?

Otherwise it is likely to be me, in which case responsiveness will be lacking.