I've written 3 macros (macro1, macro2, macro3) github repo. My goal is to have them run in batch mode, so I have
in all three so that they can be run over a large number of images. This hides the image windows but shows the Log window, (which works fine with me).
My issue is that when I use the function to invert the LUT before running Ridge detection (in macro2 and macro3), these 2 functions create windows that I need to "OK" before the macros will continue. Is am I missing an obvious way to automatically run these functions:
run("Ridge Detection", "line_width=2 high_contrast=255 low_contrast=240 extend_line show_junction_points show_ids displayresults add_to_manager method_for_overlap_resolution=SLOPE sigma=1.2 lower_threshold=16.83 upper_threshold=40");
Without having to click the OK button to continue my macro?