I have written a macro to perform mathematical operations on an image stack using the Fiji implementation.
The final step of this macro is to plot the average intensity of each frame (Plot Z-axis profile).
I am interested in the values themselves, rather than on the plot ImageJ provides.
So, on the graph I have to click the LIST button so that I access a table and the values I then copy to the clipboard to paste in another application.
My question is: is there a command I can use in my macro script to get the values from the table and copy them straight onto the clipboard, so that after running the macro on a stack all I would need to do is to paste the values I get?
If copy is not possible, how can I call up the table with Z-axis average intensity profile from a macro command instead of having to click on the LIST button.
Many thanks for the input!!