Morphometric parameters for 3D microCT calculation

Tags: #<Tag:0x00007fb87e2ccd90> #<Tag:0x00007fb87e2ccc00> #<Tag:0x00007fb87e2cc9d0>


Hi there,

I am new here and have very few experience with Fiji ImageJ, and I wonder if you can recommend any plugins to measure such properties of 3D microCT as:

  • object surface/volume ratio
  • structure thickness
  • porosity
  • volume-equivalent sphere diameter
  • tortuosity
  • structure linear density

Is it possible finally?
Many thanks!


I would recommend BoneJ which provides many 3D measurements.
You may also want to check MorphoLibJ, or the 3D ImageJ Suite, both provide 3D analysis tools.