I’ve been attempting to use TrackMate in Fiji to automatically track individually-housed tadpoles over 10-minute video segments. I get all the way through the process just fine, but at the end I notice that my spots are “jumpy” (IE shift a few pixels in random directions) fairly frequently. This results in a LOT of tracks (given 10-minutes of video) that are very small. Is there a way to filter out small jumps like this? The track editing is not super amateur-friendly, so I’m having trouble even selecting tracks like this to remove, or identifying which trackIDs they are. Anything helps!
I’ve recorded 10 minutes of video at 1080p and 60fps and altered the video to 768p and 15 fps because the tadpoles don’t move fast enough to require that sort of resolution. The images are still “jumpy” if run in the higher quality.