I’m working with the Multiview reconstruction plugin for deconvolution of lightsheet microscopy data. My error comes when I run the “deconvolve dataset” function repeatedly through a macro. This results in an “Out of Memory” error after around 38 repetitions of the function.
I have increased the maximum memory available to 180 Gb (Via the memory and threads option.) and run the garbage collector multiple times after the completion of each step in the macro. This results in the memory usage topping out at around 100 Gb each iteration, as displayed by the system monitor and imageJ memory monitor.
However I still receive “Out of Memory” errors. Does anyone have any idea where this memory limit could be coming from?
Edit: Full error message,
Out of memory
All available memory (1997MB) has been
used. To make more available, use the
Edit>Options>Memory & Threads command.
The Memory & Threads option is set to 180000 MB, so I am very confused.