PlugIn Color Pixel Counter: Sum of %Color exceeds 100%

plugin
color-analysis
fiji
Tags: #<Tag:0x00007fd546816230> #<Tag:0x00007fd546815fb0> #<Tag:0x00007fd546815da8>

#1

Hello everyone,
My goal is to count the amount of the different colors of an image. However the total sum of the colors is not 100%.
Here is what I did:
After I chose Color Pixel Counter I select display particle size with 0.2100 pixels per particle and the minimum intensity value (1-255) of 230. Also select the display color percentage. I did this for all six colors: Blue, Yellow, Red, Green, Cyan, Magenta.

The result:8GAyftZ5RkyoddKzzSLJMQ_thumb_6049

Do you have any ideas? Maybe regarding the way the image is being imported or anything?
Thanks for help in advance!

Christopher


#2

@ChrisBoe

So, I’ve never used the Color Pixel Counter plugin myself…

but I’m assuming because you set a minimum intensity - ie, you are only using a subset of your total pixels as a result - is why you are not getting things adding up to 100% (% Color total is 90.869%). If you don’t set that minimum - you should be counting everything and get 100%.

I could be totally off here. So - perhaps you can upload your image so we can test ourselves using your same settings, etc.?

eta