I am using imageJ for particle analysis purposes and created a macro to do all the job, after original image opened.
My current need requires a bit of programming and Im afraid it is something I am clueless.
What I want to do is, after creation of ROIs for detected particles by particle analysis tools, (original one or by biovoxxel plugin), I want to crop and save each of these ROIs (listed in ROI manager) from ‘original’ image, as individual .png files named like
There are 3000 images and total particle count is about 30K, so I cant do this manually.
Can anyone help me on how to make this, programmatically, in imageJ, if its possible at all?
(If it cant be done all at once, I can first run my macro for each image manually, save .roi files with same name, then the program may read this roi file for each image then appy the croppings… Just an idea…)
I appreciate any help.